{
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  "Package": "pgirmess",
  "Title": "Spatial Analysis and Data Mining for Field Ecologists",
  "Version": "2.0.3",
  "Date": "2024-01-24",
  "Description": "Set of tools for reading, writing and transforming spatial\nand seasonal data, model selection and specific statistical\ntests for ecologists. It includes functions to interpolate\nregular positions of points between landmarks, to discretize\npolylines into regular point positions, link distant\nobservations to points and convert a bounding box in a spatial\nobject. It also provides miscellaneous functions for field\necologists such as spatial statistics and inference on\ndiversity indexes, writing data.frame with Chinese characters.",
  "Authors@R": "c(\nperson(\"Patrick\", \"Giraudoux\", role = c(\"aut\", \"cre\"), email = \"patrick.giraudoux@univ-fcomte.fr\", comment=c(ORCID=\"0000-0003-2376-0136\")),\nperson(\"Jean-Philippe\", \"Antonietti\", role = c(\"ctb\"), email = \"Jean-Philippe.Antonietti@unil.ch\"),\nperson(\"Colin\", \"Beale\", role = c(\"ctb\"), email = \"c.beale@macaulay.ac.uk\"),\nperson(\"Ulrike\", \"Groemping\", role = c(\"ctb\"), email = \"ulrike.groemping@bht-berlin.de\"),\nperson(\"Renaud\", \"Lancelot\", role = c(\"ctb\"), email = \"renaud.lancelot@cirad.fr\"),\nperson(\"David\", \"Pleydell\", role = c(\"ctb\"), email = \"david.pleydell@inrae.fr\"),\nperson(\"Mike\", \"Treglia\", role = c(\"ctb\"), email = \"mike-treglia@utulsa.edu\"))",
  "License": "GPL (>= 2)",
  "URL": "https://github.com/pgiraudoux/pgirmess",
  "Author": "Patrick Giraudoux [aut, cre]\n(<https://orcid.org/0000-0003-2376-0136>), Jean-Philippe\nAntonietti [ctb], Colin Beale [ctb], Ulrike Groemping [ctb],\nRenaud Lancelot [ctb], David Pleydell [ctb], Mike Treglia [ctb]",
  "Maintainer": "Patrick Giraudoux <patrick.giraudoux@univ-fcomte.fr>",
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibssl-dev libproj-dev libsqlite3-dev libudunits2-dev",
  "Repository": "https://pgiraudoux.r-universe.dev",
  "Date/Publication": "2024-01-24 20:32:02 UTC",
  "RemoteUrl": "https://github.com/pgiraudoux/pgirmess",
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  "Packaged": {
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  "_published": "2026-06-05T10:58:48.761Z",
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  "_exports": [
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    "CI",
    "classnum",
    "cormat",
    "correlog",
    "date2winter",
    "diag2edge",
    "difshannonbio",
    "dirProj",
    "dirSeg",
    "distNNeigh",
    "distNode",
    "distSeg",
    "distTot",
    "expandpoly",
    "findR",
    "friedmanmc",
    "kruskalmc",
    "ks.gof",
    "mergeTrackObs",
    "pairsrp",
    "pave",
    "permcont",
    "PermTest",
    "piankabio",
    "piankabioboot",
    "polycirc",
    "polycirc2",
    "print.mc",
    "Segments",
    "selMod",
    "shannon",
    "shannonbio",
    "shannonbioboot",
    "st_thintrack",
    "tabcont2categ",
    "trans2pix",
    "trans2seg",
    "transLines2pix",
    "TukeyHSDs",
    "val4symb",
    "write.delim",
    "writecn.delim"
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  "_datasets": [
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      "name": "preybiom",
      "title": "Jackal and Genet diet in Algeria",
      "object": "preybiom",
      "file": "preybiom.rda",
      "class": [
        "data.frame"
      ],
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        "faeces",
        "site",
        "saison",
        "sp",
        "category",
        "biomasse"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "siegelp179",
      "title": "Data on rats training",
      "object": "siegelp179",
      "file": "siegelp179.rda",
      "class": [
        "data.frame"
      ],
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        "block",
        "treatment",
        "score"
      ],
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      "table": true,
      "tojson": true
    }
  ],
  "_help": [
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      "page": "bbox2sf",
      "title": "Convert a bounding box into a sf object.",
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      ]
    },
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      "page": "CI",
      "title": "Confidence interval of percentages",
      "topics": [
        "CI"
      ]
    },
    {
      "page": "classnum",
      "title": "Gives an index vector of the class category of each value of a numerical vector",
      "topics": [
        "classnum",
        "print.clnum"
      ]
    },
    {
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      "title": "Gives a correlation matrix and the probability of Ho for each correlation",
      "topics": [
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      ]
    },
    {
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      "title": "Computes Moran's or Geary's coefficients on distance classes",
      "topics": [
        "correlog",
        "plot.correlog",
        "print.correlog"
      ]
    },
    {
      "page": "date2winter",
      "title": "Convert a POSIXt date into categories corresponding to a autumn/winter/spring sequence",
      "topics": [
        "date2winter"
      ]
    },
    {
      "page": "diag2edge",
      "title": "Computes the edge of a square from its diagonal",
      "topics": [
        "diag2edge"
      ]
    },
    {
      "page": "difshannonbio",
      "title": "Empirical confidence interval of the bootstrap of the difference between two Shannon indices",
      "topics": [
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      ]
    },
    {
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      "title": "Computes new coordinates given bearings and distances.",
      "topics": [
        "dirProj"
      ]
    },
    {
      "page": "dirSeg",
      "title": "Computes segment directions.",
      "topics": [
        "dirSeg"
      ]
    },
    {
      "page": "distNNeigh",
      "title": "Computes distances to the nearest neighbour",
      "topics": [
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      ]
    },
    {
      "page": "distNode",
      "title": "Computes the distances between each nodes of a polyline.",
      "topics": [
        "distNode"
      ]
    },
    {
      "page": "distSeg",
      "title": "Computes distances between the top coordinates of segments.",
      "topics": [
        "distSeg"
      ]
    },
    {
      "page": "distTot",
      "title": "Computes the total length of a polyline.",
      "topics": [
        "distTot"
      ]
    },
    {
      "page": "expandpoly",
      "title": "Homothetia (size expansion) of a polygon",
      "topics": [
        "expandpoly"
      ]
    },
    {
      "page": "findR",
      "title": "Computes the distance between the centroid and the most distant coordinate of a geographical coordinate set",
      "topics": [
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      ]
    },
    {
      "page": "friedmanmc",
      "title": "Multiple comparisons after Friedman test",
      "topics": [
        "friedmanmc"
      ]
    },
    {
      "page": "kruskalmc",
      "title": "Multiple comparison test after Kruskal-Wallis",
      "topics": [
        "kruskalmc",
        "kruskalmc.default",
        "kruskalmc.formula"
      ]
    },
    {
      "page": "ks.gof",
      "title": "Kolmogorof-Smirnov goodness of fit test to normal distribution",
      "topics": [
        "ks.gof"
      ]
    },
    {
      "page": "mergeTrackObs",
      "title": "Count the nearest observations to points corresponding to track intervals",
      "topics": [
        "mergeTrackObs"
      ]
    },
    {
      "page": "pairsrp",
      "title": "Produces a matrix of scatterplot, regression coefficient and p(Ho)",
      "topics": [
        "pairsrp"
      ]
    },
    {
      "page": "pave",
      "title": "Provide square polygons or their node coordinates along a segment",
      "topics": [
        "pave"
      ]
    },
    {
      "page": "permcont",
      "title": "Random permutation of a contingency table n row x 2 columns",
      "topics": [
        "permcont"
      ]
    },
    {
      "page": "PermTest",
      "title": "Permutation test for lm, lme and glm (binomial and Poisson) objects",
      "topics": [
        "PermTest",
        "PermTest.glm",
        "PermTest.lm",
        "PermTest.lme",
        "print.PermTest"
      ]
    },
    {
      "page": "piankabio",
      "title": "Computes the Pianka's index of niche overlap",
      "topics": [
        "piankabio"
      ]
    },
    {
      "page": "piankabioboot",
      "title": "Bootstrap Pianka's index",
      "topics": [
        "piankabioboot"
      ]
    },
    {
      "page": "polycirc",
      "title": "Computes the polygon coordinates of a circle",
      "topics": [
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      ]
    },
    {
      "page": "polycirc2",
      "title": "Computes the polygon coordinates of a circle sector",
      "topics": [
        "polycirc2"
      ]
    },
    {
      "page": "preybiom",
      "title": "Jackal and Genet diet in Algeria",
      "topics": [
        "preybiom"
      ]
    },
    {
      "page": "print.mc",
      "title": "print method for objects of class 'mc'",
      "topics": [
        "print.mc"
      ]
    },
    {
      "page": "Segments",
      "title": "Draw line segments between pairs of points.",
      "topics": [
        "Segments"
      ]
    },
    {
      "page": "selMod",
      "title": "Model selection according to information theoretic methods",
      "topics": [
        "selMod",
        "selMod.glm",
        "selMod.list",
        "selMod.lm"
      ]
    },
    {
      "page": "shannon",
      "title": "Computes Shannon's and equitability indices",
      "topics": [
        "shannon"
      ]
    },
    {
      "page": "shannonbio",
      "title": "Computes Shannon's and equitability indices from a data frame of dietary analysis (n, biomass,...)",
      "topics": [
        "shannonbio"
      ]
    },
    {
      "page": "shannonbioboot",
      "title": "Boostrap Shannon's and equitability indices",
      "topics": [
        "shannonbioboot"
      ]
    },
    {
      "page": "siegelp179",
      "title": "Data on rats training",
      "topics": [
        "siegelp179"
      ]
    },
    {
      "page": "st_thintrack",
      "title": "Thin a track just keeping the points separated by a user defined minimal distance",
      "topics": [
        "st_thintrack"
      ]
    },
    {
      "page": "tabcont2categ",
      "title": "Convert a contingency table (data.frame) into a presence/absence table of categories",
      "topics": [
        "tabcont2categ"
      ]
    },
    {
      "page": "trans2pix",
      "title": "Convert a transect coordinate file with some waypoints separated by NA into a matrix with intermediate coordinates replacing NA.",
      "topics": [
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      ]
    },
    {
      "page": "trans2seg",
      "title": "Convert a transect coordinate file into a matrix with segment coordinates.",
      "topics": [
        "trans2seg"
      ]
    },
    {
      "page": "transLines2pix",
      "title": "Convert MULTILINESTRING and/or LINESTRING into POINT geometry with points at regular distance between nodes",
      "topics": [
        "transLines2pix"
      ]
    },
    {
      "page": "TukeyHSDs",
      "title": "Simplify the list of a TukeyHSD object keeping the significant differences only.",
      "topics": [
        "TukeyHSDs"
      ]
    },
    {
      "page": "val4symb",
      "title": "Center a numerical vector on a parameter position and provides absolute values and colors according to negative and positive values",
      "topics": [
        "val4symb"
      ]
    },
    {
      "page": "write.delim",
      "title": "Write a data.frame",
      "topics": [
        "write.delim"
      ]
    },
    {
      "page": "writecn.delim",
      "title": "Write a data.frame that has Chinese characters",
      "topics": [
        "writecn.delim"
      ]
    }
  ],
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  "_rundeps": [
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    "classInt",
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